The input panel contains the required inputs for drawing a plot.You can rename or delete a sheet by clicking on the corresponding icon next to the sheet name.You can search for a column by typing in the “Find a column” input field or add a new sheet by clicking on the “Add new sheet” button.The data panel contains your data, each line represents the column name, and its type (numerical or text).After submitting your data and selecting the “Basic chart” option, BioVinci will navigate to the “Basic chart” dashboard.
For more information about submitting your own data and labels, as well as customizing the heatmap, see the documentation below. You further can subset the rows or columns to create a smaller heatmap. You can easily see the pattern of the analysis result.įrom here, you can interact with the heatmap by zooming in the region of interest.
We have already performed hierarchical clustering. The data contains two groups: Group 1 and Group 2, and a column annotation contains two labels: Up-Regulated and Down-Regulated for classifying quantitative changes in gene expression levels between two groups. Step 4: In this example, we used the differential expression genes analysis result from BioTuring Browser. Our examples are divided into 3 tabs: “ Plot”, “ Heatmap”, and “Dimensionality Reduction”.
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The following short tutorial will show you how to draw heatmap from BioVinci examples. For more details about the decision tree model, and the methods we use for reducing the dimensions of the data, as well as submitting your own data, see the documentation below. Step 5: You can switch between different dimensionality reduction methods, or adjust the current method parameters by clicking on the “ Change method ” button.įrom here, you can extract the important features in our breast cancer data using the decision tree model. Click on the thumbnail to explore the result.
Step 4: In this example, we have applied different dimensionality reduction methods on the data. Step 3: Select the example of your interest, then click on the “ Create” button. Choose the “Dimensionality Reduction” tab. Step 2: In the “New Workset” dialog, you will see two tabs representing two kinds of workset: one contains examples, and the other is for generating new plots. Step 1: Click on the “ New Workset” button on the homepage. The following short tutorial will show you how to perform dimensionality reduction from BioVinci examples.
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